miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|51576678|gb|CV094514.1|CV094514 AACAATCACCCAAGTCTCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGAGCTCTTGAATACCTCTGGTCTAT
CAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCC
CTGGATAACCATGTGACTGTACTTCTTGAGGCTGGGAAACCAATCTACACACCATCTTTTGCATATGGGGTGTTGAGAAG
ATTCTTGCCTGAGGATAAGGTTGATTCAATTAAGGGCCTTGCTCTCACAGCTGATGGAAATGGTGCAGTGTTTGATGTAG
CAACTGAAGACCTGGACGCATTTCTCGCTGGTCAGGAGAATGCAGCTAATGTGAGCTTAGAGGTGTTGAAGGCACTGCCA
CGCTTGCAAGAAAGAGACCAGTCAAGAGGGGGACGATTTGGAGGTGGTGGCCGAGGCGGTGGCTTTGGGGGAAGAGGTGG
TGGTAGTAATAGGTTCTCAGGGGGAAGAGTGGTCGGGGTGGGTGGAGGTTTTTCAAATAGAAGAAATGATAGATTTTCTG
GTGGCTCCAATCGTGGGAGGGGCCGCAGCACAAATGGTGAAGGCCTCGTAATCTGTGACA




Most similar to sp|Q41382|RH7_SPIOL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7
           OS=Spinacia oleracea GN=RH7 PE=2 SV=1
          Length = 685

 Score =  166 bits (420), Expect = 1e-40
 Identities = 85/139 (61%), Positives = 107/139 (76%)
 Frame = +2

Query: 5   ITQVSDSVIPAFKSAAEELLNTSGLSAVEXXXXXXXXXSGYTEIKSRSLLASLDNHVTVL 184
           I Q+SDSVIPAFK AAEELL+TSGLSAV+         +GY++IK RSLL  ++ +VT+L
Sbjct: 502 ILQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSDIKERSLLTGMEGYVTLL 561

Query: 185 LEAGKPIYTPSFAYGVLRRFLPEDKVDSIKGLALTADGNGAVFDVATEDLDAFLAGQENA 364
           L+AG+P Y  SFAY VL+RFLP  K DSI G+ALTAD +GAVFDV  +DL+ FL G ENA
Sbjct: 562 LDAGRPFYGQSFAYTVLKRFLPATKADSIMGVALTADKSGAVFDVPVDDLETFLVGAENA 621

Query: 365 ANVSLEVLKALPRLQERDQ 421
           A V+L+V+KALP L+E+ Q
Sbjct: 622 AGVNLDVVKALPPLEEKVQ 640